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1

CRYSTALP2: sequence-based protein crystallization propensity prediction

Lukasz Kurgan, Ali A Razib, Sara Aghakhani, Scott Dick, Marcin Mizianty, Samad Jahandideh

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 2.10 MB

english, 2009

2

A Critical Comparative Assessment of Predictions of Protein-Binding Sites for Biologically Relevant Organic Compounds

Ke Chen, Marcin J. Mizianty, Jianzhao Gao, Lukasz Kurgan

Journal:

Year:

2011

Language:

english

File:

PDF, 842 KB

english, 2011

3

Exceptionally abundant exceptions: comprehensive characterization of intrinsic disorder in all domains of life

Peng, Zhenling, Yan, Jing, Fan, Xiao, Mizianty, Marcin J., Xue, Bin, Wang, Kui, Hu, Gang, Uversky, Vladimir N., Kurgan, Lukasz

Journal:

Cellular and Molecular Life Sciences

Year:

2015

Language:

english

File:

PDF, 4.75 MB

english, 2015

4

Toward maximum-predictive-value classification

Chalmers, Eric, Mizianty, Marcin, Parent, Eric, Yuan, Yan, Lou, Edmond

Journal:

Pattern Recognition

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

5

In-silico prediction of disorder content using hybrid sequence representation

Marcin J Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A Keith Dunker, Vladimir N Uversky, Lukasz Kurgan

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 522 KB

english, 2011

6

ATPsite: sequence-based prediction of ATP-binding residues

Ke Chen, Marcin J Mizianty, Lukasz Kurgan

Journal:

Proteome Science

Year:

2011

Language:

english

File:

PDF, 424 KB

english, 2011

7

Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information

Marcin J. Mizianty, Lukasz Kurgan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 243 KB

english, 2011

8

Protein intrinsic disorder as a flexible armor and a weapon of HIV-1

Bin Xue, Marcin J. Mizianty, Lukasz Kurgan, Vladimir N. Uversky

Journal:

Cellular and Molecular Life Sciences

Year:

2012

Language:

english

File:

PDF, 2.53 MB

english, 2012

9

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

Marcin J Mizianty, Lukasz Kurgan

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

10

Meta prediction of protein crystallization propensity

Marcin J. Mizianty, Lukasz Kurgan

Journal:

Biochemical and Biophysical Research Communications

Year:

2009

Language:

english

File:

PDF, 483 KB

english, 2009

11

Finding Protein Targets for Small Biologically Relevant Ligands across Fold Space Using Inverse Ligand Binding Predictions

Gang Hu, Jianzhao Gao, Kui Wang, Marcin J. Mizianty, Jishou Ruan, Lukasz Kurgan

Journal:

Year:

2012

Language:

english

File:

PDF, 415 KB

english, 2012

12

A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome

Peng, Zhenling, Oldfield, Christopher J., Xue, Bin, Mizianty, Marcin J., Dunker, A. Keith, Kurgan, Lukasz, Uversky, Vladimir N.

Journal:

Cellular and Molecular Life Sciences

Year:

2014

Language:

english

File:

PDF, 2.42 MB

english, 2014

13

Prediction and characterization of cyclic proteins from sequences in three domains of life

Kedarisetti, Pradyumna, Mizianty, Marcin J., Kaas, Quentin, Craik, David J., Kurgan, Lukasz

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2014

Language:

english

File:

PDF, 1.18 MB

english, 2014

14

Stochastic machines as a colocalization mechanism for scaffold protein function

Xue, Bin, Romero, Pedro R., Noutsou, Maria, Maurice, Madelon M., Rüdiger, Stefan G.D., William, Albert M., Mizianty, Marcin J., Kurgan, Lukasz, Uversky, Vladimir N., Dunker, A. Keith

Journal:

Year:

2013

Language:

english

File:

PDF, 613 KB

english, 2013

15

RAPID: Fast and accurate sequence-based prediction of intrinsic disorder content on proteomic scale

Yan, Jing, Mizianty, Marcin J., Filipow, Paul L., Uversky, Vladimir N., Kurgan, Lukasz

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2013

Language:

english

File:

PDF, 1.82 MB

english, 2013

16

More than just tails: intrinsic disorder in histone proteins

Peng, Zhenling, Mizianty, Marcin J., Xue, Bin, Kurgan, Lukasz, Uversky, Vladimir N.

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 4.68 MB

english, 2012

17

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Hong Kong, China (2010.12.18-2010.12.21)] 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptors

Chen, Ke, Marcin, J. Mizianty, Kurgan, Lukasz

Year:

2010

Language:

english

File:

PDF, 479 KB

english, 2010

18

Genome-scale prediction of proteins with long intrinsically disordered regions

Peng, Zhenling, Mizianty, Marcin J., Kurgan, Lukasz

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 730 KB

english, 2014

19

[IEEE 2008 Seventh International Conference on Machine Learning and Applications - San Diego, CA, USA (2008.12.11-2008.12.13)] 2008 Seventh International Conference on Machine Learning and Applications - Comparative Analysis of the Impact of Discretization on the Classification with Naïve Bayes and Semi-Naïve Bayes Classifiers

Mizianty, Marcin, Kurgan, Lukasz, Ogiela, Marek

Year:

2008

Language:

english

File:

PDF, 242 KB

english, 2008

20

Covering complete proteomes with X-ray structures: a current snapshot

Mizianty, Marcin J., Fan, Xiao, Yan, Jing, Chalmers, Eric, Woloschuk, Christopher, Joachimiak, Andrzej, Kurgan, Lukasz

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

21

IMPROVED SEQUENCE-BASED PREDICTION OF STRAND RESIDUES

KEDARISETTI, KANAKA DURGA, MIZIANTY, MARCIN J., DICK, SCOTT, KURGAN, LUKASZ

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2011

Language:

english

File:

PDF, 376 KB

english, 2011

22

Discretization as the enabling technique for the Naïve Bayes and semi-Naïve Bayes-based classification

Mizianty, Marcin J., Kurgan, Lukasz A., Ogiela, Marek R.

Journal:

The Knowledge Engineering Review

Year:

2010

Language:

english

File:

PDF, 564 KB

english, 2010

23

MFDp2

Mizianty, Marcin J., Peng, Zhenling, Kurgan, Lukasz

Journal:

Intrinsically Disordered Proteins

Year:

2013

Language:

english

File:

PDF, 2.31 MB

english, 2013

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